what is the meaning of contact energy's Positive value and Negative value
11 days ago by
11 days ago by
Besides that, you always need to take into account all possible interactions. So even if a particular pair of cells has a j value of -10 and a large contact area (contact energy is J*contact_area) that contact could still be displaced if either of the two cells has a higher affinity (more negative J) for some other cell type and/or the other cell type is more flexible and can acquire a larger contact surface area.
So, in general, you need to take into account all possible pairs of interactions; for N cell types (and assuming Medium is one of those N types) there are N^2/2 + N/2 = (N/2)(N+1) possible interactions. For 3 cell types there are 6 interaction, for 4 cell types there are 10 interactions, ...
Beyond the J values the actual interaction energy will also be dependent on how stiff the surface of the cells is. With a very low LambdaSurface and/or large target surface area, cells can create extra surface in order to reap the reward of a large contact surface if that lowers contact energy.
Finally, you need to remember that movement of a CC3D configuration to a lower energy configuration can only occur if a suitable pathway exists. In other words, it is possible to trap a CC3D system in an energetically unfavorable state if there is no reasonably low energy pathway to a lower energy state. (That is also true of biology, biological systems are trapped in high energy states (life) since a low energy pathway to lower energy states (death) isn't always readily available.)
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