compute expression over all dofs


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3 months ago by
Ovais  
Hi there,

I have solved a PDE and stored the solution in .h5 format file. Now i want to retrieve each time step , compute an expression over all dofs and then project the computed expression on a function space. It can be represented as following

Step 1. Solve PDE and store solution as .h5 format
Step 2. Compute expression using retrieved time step of .h5 file 
Step 3. project computed expression  on a  function space of the same mesh as that of PDE of step1

For param = 1 the process proceeds in a satisfactory manner however for param = 70000 or even much less number like 100 i start to get very large numbers which ultimately  gives nan or inf  ... Can any one guide what could be the mistake ?  
A MWE is could be ..
from dolfin import *

mesh = Mesh('boxmesh.xml')
Q = FunctionSpace(mesh, "CG", 1)
F = Function(Q)
T = Function(Q)
T_pre = Function(Q)
T = interpolate(Expression('0',degree=1),Q)
T_pre = interpolate(Expression('0',degree=1),Q)

hdf = HDF5File(mesh.mpi_comm(), "v.h5", "r")
attr = hdf.attributes("function")
nsteps = attr['count']
for i in range(nsteps):
    dataset = "function/vector_%d"%i
    attr = hdf.attributes(dataset)
    print 'Retrieving time step:', attr['timestamp']
    hdf.read(F, dataset)
    myExpr = Expression('param*((1/(1+0.05*(0.3+(1-0.1)*exp(-exp(0.05*(a - 0))))))*(b+0.05*(0.3+(1-0.1)*exp(-exp(0.05*(a - 0))))*0.005*(a-(-94.75))))',a=F,b=T_pre,param=70000,degree=1)
    
    LagrangeInterpolator().interpolate(T, myExpr)
    T_pre.assign(T)
    T_out = T.compute_vertex_values(mesh)
    print(T_out)​
Community: FEniCS Project
1
You have a rather complicated Expression but interpolate it with "degree=1". Did you try higher degrees for approximating the Expression?
written 3 months ago by Lukas O.  
Thanks for responding lukas. There was a mistake in the way i had written the 'for' loop. The process was giving very large values due to my own mistake.  I am able to interpolate with degree 1 now
just a side note.. under what circumstance would increasing degree of interpolation help me to achieve better (more accurate ) results ?

I have used degree one because the v.h5 comes from a function space which was defined over lagrange element with degree = 1. Will increasing degree of expression (in this case) lead to more accurate results ?
written 3 months ago by Ovais  
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