(Closed) Compiling fenics 2017.1 on a bullx system
I want to compile the latest stable fenics release for use on a bullx system, however I have some difficulties to do so.
First of all: obtaining the source code from git with: git clone firstname.lastname@example.org:fenics-project/xxx gives me the latest development version of all packages (fiat, dolfin mshr, etc). When I compile this (which I seem to be able to do, but some problems remain) and run:
I get: 2017.2.0.dev0. Is there an easy way to obtain the latest stable release from fenics via git (i.e. 2017.1)? I now manually downloaded the source code of 2017.1 and compiled that, but I prefer to use git because this makes switching between versions (maybe in the future) a lot more convenient.
Secondly: after installing fiat, instant, dijitso, ufl, ffc and compiling and installing dolfin from source (I seem unable to compile mshr, but as I use an external meshing package this is acceptable), I get the following error when I try to import fenics into pyton 2.7.12:
Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/squicken/.local/lib/python2.7/site-packages/fenics/__init__.py", line 7, in <module> from dolfin import * File "/home/squicken/.local/lib/python2.7/site-packages/dolfin/__init__.py", line 17, in <module> from . import cpp File "/home/squicken/.local/lib/python2.7/site-packages/dolfin/cpp/__init__.py", line 43, in <module> exec("from . import %s" % module_name) File "<string>", line 1, in <module> File "/home/squicken/.local/lib/python2.7/site-packages/dolfin/cpp/common.py", line 32, in <module> _common = swig_import_helper() File "/home/squicken/.local/lib/python2.7/site-packages/dolfin/cpp/common.py", line 28, in swig_import_helper _mod = imp.load_module('_common', fp, pathname, description) ImportError: /home/squicken/lib/libdolfin.so.2017.1: undefined symbol: _ZNK5boost15program_options22error_with_option_name23substitute_placeholdersERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE
What is causing this problem and is there a way I can resolve this?
Thanks in advance.
- I think you can just do
git checkout 2017.1.0
- It looks like you are missing some symbols from boost. Check your installation of boost. Check the linking of libdolfin (use "ldd" or similar)